STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT68235.1XRE family transcriptional regulator. (109 aa)    
Predicted Functional Partners:
GAT68234.1
Toxin RelE.
 
   
 0.953
GAT66008.1
Toxin RelE.
 
   
 0.801
GAT70164.1
DNA-binding protein.
 
   
 0.799
GAT68301.1
Transcriptional regulator.
   
 
  0.591
GAT67816.1
Phosphoadenosine phosphosulfate reductase.
  
     0.557
GAT71297.1
SARP family transcriptional regulator.
  
    0.528
GAT67600.1
Hypothetical protein.
  
     0.506
GAT68241.1
gntR family transcriptional regulator.
  
    0.484
GAT67590.1
Hypothetical protein.
  
     0.473
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.431
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.