STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT68257.1Glyoxalase. (128 aa)    
Predicted Functional Partners:
GAT68258.1
HTH type 11 transcriptional regulator.
  
    0.576
GAT66860.1
Nonribosomal peptide synthase.
  
     0.531
GAT68477.1
Membrane protein.
  
     0.528
GAT69804.1
Glyoxalase.
  
 
  0.514
GAT64795.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
  0.456
GAT65371.1
merR family transcriptional regulator.
  
     0.417
GAT68259.1
Hypothetical protein.
       0.403
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.