STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT68350.1Glycoside hydrolase. (937 aa)    
Predicted Functional Partners:
GAT67638.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
 
 0.816
GAT69991.1
Chitinase.
 
 0.799
GAT67850.1
Secreted protein.
  
 0.767
GAT66783.1
Glycosyl hydrolase; Belongs to the glycosyl hydrolase 18 family.
 
 
 0.751
GAT65640.1
Chitinase.
 
 
 0.743
GAT65308.1
Beta-glucanase.
 
   
  0.735
GAT66293.1
Endoglucanase.
 
  
 0.700
GAT70125.1
Endoglucanase.
  
  
  0.687
GAT70622.1
Cellulose-binding protein.
  
  
  0.676
GAT70401.1
Polysaccharide deacetylase.
  
 
 0.588
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.