STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT68387.1Oxidoreductase. (398 aa)    
Predicted Functional Partners:
GAT68388.1
DNA-directed RNA polymerase sigma-70 factor.
     0.732
GAT71030.1
NADH dehydrogenase.
     
 0.727
GAT66172.1
NADH-quinone oxidoreductase subunit L.
   
 
 0.667
GAT68063.1
NADH:ubiquinone oxidoreductase subunit L.
   
 
 0.667
gpmA
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
   0.632
GAT64650.1
NADH dehydrogenase.
  
  
 
0.631
GAT69579.1
NADH dehydrogenase.
  
  
 
0.631
nuoA
NADH dehydrogenase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.
   
 
 0.617
GAT66174.1
NADH-quinone oxidoreductase subunit M.
   
 
 0.572
GAT68064.1
NADH:ubiquinone oxidoreductase subunit M.
   
 
 0.572
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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