STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT68527.1MBL fold metallo-hydrolase. (303 aa)    
Predicted Functional Partners:
GAT64890.1
Oxidoreductase.
   
  0.618
GAT69751.1
Molybdopterin biosynthesis protein MoeZ.
  
  0.571
GAT67109.1
AMP-dependent synthetase.
   
 0.539
GAT67123.1
Beta-ketoacyl synthase.
   
 0.529
GAT67111.1
Methyltransferase.
 
 
 0.454
GAT68528.1
Serine/threonine protein kinase-like protein.
       0.446
GAT68529.1
Serine/threonine protein kinase-like protein.
       0.446
GAT70659.1
Kinase.
  
     0.433
GAT70465.1
N5,N10-methylene tetrahydromethanopterin reductase.
  
  
  0.404
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.