STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT68659.1Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (345 aa)    
Predicted Functional Partners:
GAT68656.1
Peptide ABC transporter permease.
 
  0.992
GAT71275.1
ABC transporter permease.
 
  0.987
GAT64688.1
ABC transporter permease.
 
  0.986
GAT66997.1
Peptide ABC transporter permease.
 
  0.986
GAT68364.1
ABC transporter permease.
 
  0.984
GAT68305.1
Peptide ABC transporter permease.
 
  0.983
GAT70067.1
Peptide ABC transporter permease.
 
  0.976
GAT68658.1
ABC transporter permease.
 
  0.971
GAT70020.1
Peptide ABC transporter permease.
 
  0.966
GAT68574.1
Peptide ABC transporter permease.
 
  0.959
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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