STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT69351.1Lipase. (306 aa)    
Predicted Functional Partners:
GAT66730.1
Peptidase M23.
  
    0.751
GAT70500.1
Metallophosphoesterase.
  
    0.683
GAT66748.1
CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.641
GAT70501.1
alpha-L-arabinofuranosidase.
 
 0.638
GAT66293.1
Endoglucanase.
  
 0.620
GAT68776.1
Hypothetical protein; T9SS C-terminal target domain-containing protein.
  
  0.610
GAT67648.1
ECF subfamily RNA polymerase sigma-24.
  
     0.606
GAT64877.1
Membrane protein.
  
     0.591
GAT70717.1
Oxidoreductase.
  
 0.585
GAT65158.1
Secreted protein.
  
     0.579
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.