GAT69409.1 protein (Planomonospora sphaerica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GAT69409.1

ABC transporter ATP-binding protein. (296 aa)

Predicted Functional Partners:

GAT69408.1

0.973

GAT69410.1

0.944

GAT66244.1

0.716

GAT69407.1

0.693

GAT69406.1

0.622

GAT65523.1

0.595

GAT66031.1

0.567

GAT64405.1

0.527

GAT66437.1

0.527

GAT68166.1

0.527

Your Current Organism:

Planomonospora sphaerica

NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAT64405.1	GAT65523.1	PS9374_00035	PS9374_01156	ABC transporter permease.	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	0.527
GAT64405.1	GAT66031.1	PS9374_00035	PS9374_01675	ABC transporter permease.	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	0.527
GAT64405.1	GAT66244.1	PS9374_00035	PS9374_01891	ABC transporter permease.	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	0.527
GAT64405.1	GAT69409.1	PS9374_00035	PS9374_05084	ABC transporter permease.	ABC transporter ATP-binding protein.	0.527
GAT65523.1	GAT64405.1	PS9374_01156	PS9374_00035	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	ABC transporter permease.	0.527
GAT65523.1	GAT66437.1	PS9374_01156	PS9374_02087	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	Membrane protein.	0.527
GAT65523.1	GAT68166.1	PS9374_01156	PS9374_03827	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	ABC transporter permease.	0.527
GAT65523.1	GAT69408.1	PS9374_01156	PS9374_05083	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	Transporter.	0.527
GAT65523.1	GAT69409.1	PS9374_01156	PS9374_05084	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.595
GAT66031.1	GAT64405.1	PS9374_01675	PS9374_00035	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	ABC transporter permease.	0.527
GAT66031.1	GAT66437.1	PS9374_01675	PS9374_02087	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	Membrane protein.	0.527
GAT66031.1	GAT68166.1	PS9374_01675	PS9374_03827	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	ABC transporter permease.	0.527
GAT66031.1	GAT69408.1	PS9374_01675	PS9374_05083	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	Transporter.	0.527
GAT66031.1	GAT69409.1	PS9374_01675	PS9374_05084	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.567
GAT66244.1	GAT64405.1	PS9374_01891	PS9374_00035	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	ABC transporter permease.	0.527
GAT66244.1	GAT66437.1	PS9374_01891	PS9374_02087	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	Membrane protein.	0.527
GAT66244.1	GAT68166.1	PS9374_01891	PS9374_03827	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	ABC transporter permease.	0.527
GAT66244.1	GAT69408.1	PS9374_01891	PS9374_05083	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	Transporter.	0.527
GAT66244.1	GAT69409.1	PS9374_01891	PS9374_05084	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.716
GAT66437.1	GAT65523.1	PS9374_02087	PS9374_01156	Membrane protein.	Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.	0.527