STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT69413.1Abortive phage infection protein. (342 aa)    
Predicted Functional Partners:
GAT69412.1
tetR family transcriptional regulator.
 
     0.632
GAT69283.1
Bacteriocin biosynthesis protein SagD.
 
  
 0.627
GAT70899.1
tetR family transcriptional regulator.
 
     0.622
GAT69414.1
NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.610
GAT67155.1
Goadsporin biosynthesis protein.
  
  
 0.531
GAT67604.1
Transglycosylase family protein; Belongs to the WXG100 family.
  
     0.507
GAT69001.1
MFS transporter.
  
     0.454
GAT70632.1
fxsB family radical SAM/SPASM domain protein.
  
     0.444
GAT68391.1
Amine oxidase.
  
     0.438
GAT70736.1
Regulatory protein arsr.
  
     0.434
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.