STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT69533.1tetR family transcriptional regulator. (195 aa)    
Predicted Functional Partners:
GAT68369.1
Deaminase.
 
     0.770
GAT67368.1
SARP family transcriptional regulator.
  
    0.621
GAT65646.1
Prenyltransferase.
  
     0.569
GAT69534.1
Hypothetical protein.
       0.542
GAT64438.1
Prephenate dehydratase.
  
     0.499
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
   
    0.495
GAT66285.1
Hypothetical protein.
   
    0.491
GAT70459.1
Transcriptional regulator, SARP family.
  
    0.490
GAT71460.1
Beta-ketoacyl synthase.
  
     0.488
GAT67096.1
ABC transporter.
  
     0.484
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.