STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT69540.1marR family transcriptional regulator. (148 aa)    
Predicted Functional Partners:
GAT69541.1
Membrane protein.
 
     0.896
GAT67093.1
Fatty acid hydroxylase.
  
     0.650
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.646
GAT68612.1
Glyoxalase.
  
  
  0.540
GAT68832.1
Conjugal transfer protein TraA.
  
     0.526
GAT68741.1
Conjugal transfer protein TraA.
  
     0.499
GAT70414.1
tetR family transcriptional regulator.
  
     0.495
GAT68074.1
Membrane protein.
  
     0.471
GAT70198.1
Glyoxalase.
  
  
  0.468
GAT69266.1
marR family transcriptional regulator.
  
     0.459
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.