STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT69721.1Anti-sigma factor. (182 aa)    
Predicted Functional Partners:
GAT69719.1
DNA-directed RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.776
GAT67648.1
ECF subfamily RNA polymerase sigma-24.
  
   0.711
GAT64945.1
RNA-binding protein.
  
     0.657
GAT64932.1
Hypothetical protein.
  
   0.650
GAT69163.1
Integral membrane protein.
  
     0.647
GAT70093.1
Molecular chaperone Hsp90.
  
     0.641
GAT66536.1
Membrane protein.
  
     0.636
GAT69779.1
UBA/THIF-type NAD/FAD-binding protein.
  
    0.629
GAT66613.1
Serine/threonine protein kinase.
  
     0.624
GAT69723.1
Translocase.
  
    0.603
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.