STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT69797.1Fibronectin type III domain-containing protein. (587 aa)    
Predicted Functional Partners:
GAT69796.1
tetR family transcriptional regulator.
 
     0.706
GAT67012.1
Lipase.
 
  
  0.688
GAT70678.1
Hypothetical protein.
  
     0.610
GAT68126.1
YD repeat-containing protein.
  
     0.576
GAT67011.1
Esterase.
  
 
 0.567
GAT69631.1
Penicillin-binding protein.
  
     0.553
GAT67095.1
ABC transporter.
  
     0.539
GAT67265.1
Acyltransferase.
  
     0.519
GAT69798.1
Phospholipase D.
       0.506
GAT70452.1
Esterase.
  
 
 0.503
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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