STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT70216.1Secretion system protein. (295 aa)    
Predicted Functional Partners:
GAT70214.1
ATPase involved in chromosome partitioning.
 
     0.918
GAT70218.1
tadE family protein.
 
    0.916
GAT70215.1
Pilus assembly protein TadB.
 
     0.899
GAT70212.1
ATP/GTP-binding protein.
 
     0.890
GAT70219.1
Pilus assembly protein TadE.
 
     0.881
GAT70220.1
Peptidoglycan-binding protein LysM.
 
     0.848
GAT65077.1
ATPase involved in chromosome partitioning.
 
     0.836
GAT65079.1
Type II secretion system protein.
 
     0.805
GAT65076.1
Membrane protein.
 
    0.770
GAT65078.1
Type II secretion system protein E.
 
  
 0.725
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.