STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT70231.1Peroxiredoxin. (155 aa)    
Predicted Functional Partners:
GAT70232.1
RNA polymerase sigma24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.785
GAT68653.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.689
GAT70305.1
Membrane protein.
  
     0.587
trpC
Indole-3-glycerol-phosphate synthase; Belongs to the TrpC family.
  
    0.502
GAT71141.1
Flagellar basal body rod protein FlgG.
    
   0.463
GAT64645.1
Lantibiotic ABC transporter.
  
     0.415
GAT70221.1
Sulfurtransferase.
 
     0.414
GAT69922.1
Wall-associated protein.
  
     0.413
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.