STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT70460.1araC family transcriptional regulator. (336 aa)    
Predicted Functional Partners:
GAT70175.1
araC family transcriptional regulator.
  
   0.566
GAT68581.1
araC family transcriptional regulator.
  
   0.445
GAT71295.1
araC family transcriptional regulator.
 
  
 
0.432
GAT70994.1
araC family transcriptional regulator.
 
  
 
0.418
GAT71192.1
araC family transcriptional regulator.
 
  
 
0.415
GAT66696.1
Transcriptional regulator.
 
  
 
0.413
GAT70459.1
Transcriptional regulator, SARP family.
  
    0.404
GAT67017.1
Isochorismatase.
 
    0.402
GAT68202.1
araC family transcriptional regulator.
 
  
 
0.401
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.