STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT70477.1Saccharopine dehydrogenase. (332 aa)    
Predicted Functional Partners:
GAT70478.1
MFS transporter.
      0.790
GAT67394.1
Type 12 methyltransferase.
 
 
 0.702
GAT67386.1
Condensation protein.
 
 
 0.687
GAT67109.1
AMP-dependent synthetase.
  
 
 0.678
GAT69962.1
Lipoprotein.
  
     0.625
GAT67388.1
Non-ribosomal peptide synthetase.
 
 
 0.604
GAT70672.1
Non-ribosomal peptide synthetase.
  
 
 0.583
GAT70479.1
tetR family transcriptional regulator.
       0.552
GAT67815.1
DNA primase.
  
     0.544
GAT68929.1
Aminoglycoside phosphotransferase.
  
     0.538
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.