STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT70753.1N-acetyltransferase GCN5. (233 aa)    
Predicted Functional Partners:
GAT70803.1
Flavin-nucleotide-binding protein.
 
      0.899
GAT64516.1
N-acetylneuraminate synthase.
  
 
 0.708
GAT64754.1
Glutamate synthase.
   
 
 0.691
GAT67478.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.672
GAT70703.1
Lysine/ornithine N-monooxygenase.
  
 
 0.618
GAT70754.1
acyl-CoA dehydrogenase.
    
  0.530
GAT66162.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.525
GAT64795.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
  0.481
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.459
GAT65894.1
MFS transporter.
    
  0.441
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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