STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT70912.1ABC transporter permease. (673 aa)    
Predicted Functional Partners:
GAT70911.1
ABC transporter ATP-binding protein.
 
 0.949
GAT69566.1
Endoglucanase; Belongs to the glycosyl hydrolase 26 family.
  
     0.669
GAT65479.1
Hypothetical protein.
  
     0.616
GAT65096.1
NYN domain containing protein.
  
     0.601
GAT65393.1
Family 2 glycosyl transferase.
  
     0.573
GAT67707.1
Transcriptional regulator.
  
     0.563
GAT70910.1
luxR family transcriptional regulator.
       0.557
GAT65784.1
Secreted protein.
  
     0.523
GAT69563.1
Aminoglycoside phosphotransferase.
  
     0.516
GAT64932.1
Hypothetical protein.
  
     0.513
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.