STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT71168.1Tat pathway signal protein. (531 aa)    
Predicted Functional Partners:
GAT71167.1
Glycosyl transferase family 2.
 
    0.845
GAT67839.1
Endoglycosylceramidase.
  
     0.607
GAT71149.1
Putative flagellar hook-length control protein.
  
     0.549
GAT65326.1
PKD domain containing protein.
  
     0.538
GAT69462.1
Transcriptional regulator.
  
     0.535
GAT71166.1
Hypothetical protein.
       0.490
GAT64482.1
Fis family transcriptional regulator.
  
     0.487
GAT68955.1
Fis family transcriptional regulator.
  
     0.477
GAT69396.1
Pilus assembly protein TadG.
  
     0.472
GAT69463.1
GTP cyclohydrolase.
  
     0.451
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.