STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT71272.1acetyl-/propionyl-CoA carboxylase subunit alpha. (43 aa)    
Predicted Functional Partners:
GAT66013.1
acetyl-CoA carboxyltransferase.
  
 0.994
GAT67109.1
AMP-dependent synthetase.
  
 
 0.909
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
  0.903
GAT65098.1
methylmalonyl-CoA carboxyltransferase.
  
 0.881
GAT65864.1
acetyl-CoA carboxylase carboxyltransferase subunit.
  
 0.881
GAT65892.1
acetyl-CoA carboxylase subunit beta.
  
 0.881
GAT67168.1
methylmalonyl-CoA carboxyltransferase.
  
 0.881
GAT68267.1
propionyl-CoA carboxylase subunit beta.
  
 0.881
GAT71251.1
methylmalonyl-CoA carboxyltransferase.
  
 0.881
GAT67123.1
Beta-ketoacyl synthase.
  
 
 0.862
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.