STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001528665_01580Unannotated protein. (541 aa)    
Predicted Functional Partners:
GCA_001528665_01581
Unannotated protein.
 0.990
GCA_001528665_02823
Unannotated protein.
 
  0.901
GCA_001528665_01500
Unannotated protein.
  
 
 0.896
GCA_001528665_03022
Unannotated protein.
   
 
  0.888
GCA_001528665_03226
Unannotated protein.
   
 
 0.877
GCA_001528665_00114
Unannotated protein.
   
 
 0.874
GCA_001528665_05358
Unannotated protein.
   
  0.874
GCA_001528665_06789
Unannotated protein.
   
  0.870
GCA_001528665_01501
Unannotated protein.
    
  0.866
GCA_001528665_04803
Unannotated protein.
   
 
 0.863
Your Current Organism:
Microtetraspora malaysiensis
NCBI taxonomy Id: 161358
Other names: DSM 44579, JCM 11278, M. malaysiensis, Microtetraspora malaysiensis Nakajima et al. 2004, NBRC 100735, strain H47-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.