STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001528665_03100Unannotated protein. (409 aa)    
Predicted Functional Partners:
GCA_001528665_01779
Unannotated protein.
 
   
  0.902
GCA_001528665_01500
Unannotated protein.
    
 0.896
GCA_001528665_00462
Unannotated protein.
  
 
 0.875
GCA_001528665_06895
Unannotated protein.
  
 
 0.875
GCA_001528665_03101
Unannotated protein.
 
  
  0.840
GCA_001528665_03105
Unannotated protein.
 
     0.780
GCA_001528665_02466
Unannotated protein.
    
  0.763
GCA_001528665_03106
Unannotated protein.
 
 
 0.757
GCA_001528665_04153
Unannotated protein.
    
  0.757
GCA_001528665_03103
Unannotated protein.
 
     0.738
Your Current Organism:
Microtetraspora malaysiensis
NCBI taxonomy Id: 161358
Other names: DSM 44579, JCM 11278, M. malaysiensis, Microtetraspora malaysiensis Nakajima et al. 2004, NBRC 100735, strain H47-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.