STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO41525.1Integral membrane protein CcmA; Pfam:pfam04519 Polymer-forming cytoskeletal. (128 aa)    
Predicted Functional Partners:
ALO41526.1
Peptidase M23/M37 protein; Pfam:pfam01551 Peptidase family M23.
 
   
 0.937
ALO41527.1
Pfam:pfam09298 Fumarylacetoacetase N-terminal.
       0.788
ALO41528.1
Pfam:pfam14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal.
       0.712
ALO41427.1
Flagellin-specific chaperone FliS; Pfam:pfam02561 Flagellar protein FliS.
    
 
 0.531
ALO42429.1
Pfam:pfam00072 Response regulator receiver domain.
    
   0.519
ALO41463.1
Flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
    
 
 0.519
ALO41880.1
Pfam:pfam11813 Protein of unknown function (DUF3334).
    
   0.442
mrdA
Peptidoglycan synthetase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
   
 0.425
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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