STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO41536.1Putative enzyme of poly-gamma-glutamate biosynthesis (Capsule formation); Pfam:pfam09587 Bacterial capsule synthesis protein PGA_cap. (744 aa)    
Predicted Functional Partners:
ALO41530.1
Capsular polysaccharide biosynthesis protein CapB.
 
   
 0.917
ALO41531.1
Hypothetical protein.
       0.874
ALO41532.1
Hypothetical protein.
       0.874
ALO41533.1
Hypothetical protein.
       0.874
ALO41534.1
Hypothetical protein; Pfam:pfam14102 Capsule biosynthesis CapC.
       0.874
ALO41535.1
Hypothetical protein.
       0.874
ALO41537.1
Transcriptional regulatory protein tyrR; Pfam:pfam00158 Sigma-54 interaction domain.
       0.507
ALO44063.1
AraC family transcriptional regulator; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.480
ALO40939.1
Exopolysaccharide biosynthesis protein, putative; Pfam:pfam02397 Bacterial sugar transferase.
 
   
 0.401
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.