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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO41585.1Hypothetical protein; Pfam:pfam00932 Lamin Tail Domain. (273 aa)    
Predicted Functional Partners:
ALO41584.1
Pfam:pfam00182 Chitinase class I.
       0.773
ALO41586.1
Hypothetical protein.
       0.745
ALO41644.1
Pfam:pfam11655 Protein of unknown function (DUF2589).
  
     0.719
ALO40985.1
Bmp1; Pfam:pfam12697 Alpha/beta hydrolase family.
  
     0.711
ALO40991.1
Bmp7; Pfam:pfam00067 Cytochrome P450.
  
     0.710
ALO42390.1
Pfam:pfam01645 Conserved region in glutamate synthase.
     
 0.663
ALO41669.1
Pfam:pfam11747 Killing trait.
  
     0.639
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.634
ALO40990.1
Bmp6; Pfam:pfam01947 Protein of unknown function (DUF98).
 
     0.634
ALO41668.1
Pfam:pfam11747 Killing trait.
  
     0.618
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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