STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO40639.1Hypothetical protein; Pfam:pfam00486 Transcriptional regulatory protein, C terminal. (694 aa)    
Predicted Functional Partners:
ALO40638.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
 
 
   0.832
ALO40637.1
Protein-tyrosine-phosphatase; Pfam:pfam00149 Calcineurin-like phosphoesterase.
 
     0.485
ALO44213.1
Hypothetical protein.
  
     0.462
ALO44280.1
TonB domain protein; Pfam:pfam03544 Gram-negative bacterial TonB protein C-terminal.
 
 
   0.447
ALO41147.1
Hypothetical protein.
  
     0.436
ALO44410.1
RND transporter MFP subunit; Pfam:pfam13437 HlyD family secretion protein.
  
     0.427
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.