STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO41636.1Pfam:pfam08840 BAAT / Acyl-CoA thioester hydrolase C terminal. (282 aa)    
Predicted Functional Partners:
ALO41634.1
Pfam:pfam06580 Histidine kinase.
       0.707
ALO41635.1
Response regulator; Pfam:pfam04397 LytTr DNA-binding domain.
       0.662
ALO41637.1
Hypothetical protein.
       0.504
ALO44062.1
Pfam:pfam03572 Peptidase family S41.
  
     0.480
ALO41901.1
PTS system protein; Pfam:pfam00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1.
    
 
 0.445
ALO41734.1
Interphotoreceptor retinoid-binding protein; Pfam:pfam03572 Peptidase family S41.
  
     0.426
ALO41633.1
Ribosomal protein S6 modification protein; Pfam:pfam05618 Putative ATP-dependant zinc protease.
       0.407
ALO41632.1
30S ribosomal protein S6 modification protein; Pfam:pfam08443 RimK-like ATP-grasp domain; Belongs to the RimK family.
 
     0.403
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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