STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO41734.1Interphotoreceptor retinoid-binding protein; Pfam:pfam03572 Peptidase family S41. (335 aa)    
Predicted Functional Partners:
ALO41552.1
Lipoprotein NlpI; May be involved in cell division.
    
 
 0.682
ALO41733.1
Hypothetical protein.
       0.603
ALO41137.1
Hypothetical protein; Pfam:pfam00089 Trypsin.
  
   0.543
ALO41956.1
Hypothetical protein; Pfam:pfam08840 BAAT / Acyl-CoA thioester hydrolase C terminal.
  
     0.531
ALO41735.1
Hypothetical protein.
       0.527
ALO42072.1
Guanylate cyclase-like protein; Pfam:pfam07700 Heme NO binding.
  
     0.524
ALO41636.1
Pfam:pfam08840 BAAT / Acyl-CoA thioester hydrolase C terminal.
  
     0.426
ALO41731.1
Pfam:pfam02683 Cytochrome C biogenesis protein transmembrane region.
   
   0.424
ALO41732.1
Thioredoxin (H-type,TRX-H).
   
   0.424
PP2015_48
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
    0.412
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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