STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO40651.1Beta-1,6-galactofuranosyltransferase. (340 aa)    
Predicted Functional Partners:
glf
Pfam:pfam03275 UDP-galactopyranose mutase.
 
  
 0.978
ALO40955.1
Putative O-antigen acetylase PatA; Pfam:pfam00132 Bacterial transferase hexapeptide (six repeats).
  
  
 0.818
ALO42351.1
Hypothetical protein; Pfam:pfam12262 Bacterial virulence factor lipase N-terminal.
   
 
 0.717
ALO40944.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.675
ALO42133.1
Acetyltransferase; Pfam:pfam00132 Bacterial transferase hexapeptide (six repeats).
  
  
 0.663
ALO44629.1
1,4-alpha-glucan branching enzyme.
  
 0.597
ALO40939.1
Exopolysaccharide biosynthesis protein, putative; Pfam:pfam02397 Bacterial sugar transferase.
  
  
 0.585
ALO44350.1
Amino acid adenylation domain/thioester reductase domain protein; Pfam:pfam00501 AMP-binding enzyme.
  
 
 0.563
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.541
ALO40653.1
Hypothetical protein.
       0.484
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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