Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALO40657.1Two component, sigma54 specific, transcriptional regulator, Fis family protein; Pfam:pfam00158 Sigma-54 interaction domain. (451 aa)    
Predicted Functional Partners:
ALO40658.1
Sensor protein atoS; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
   0.898
ALO40819.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.776
ALO40656.1
Hypothetical protein; Pfam:pfam04307 Predicted membrane-bound metal-dependent hydrolase (DUF457).
       0.596
ALO43548.1
Nitrogen availability sensory kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.574
ALO41471.1
Site-determining protein; Pfam:pfam01656 CobQ/CobB/MinD/ParA nucleotide binding domain.
  
 
 0.549
ALO42215.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
  
 
 0.478
ALO41462.1
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.444
ALO40653.1
Hypothetical protein.
       0.411
ALO40654.1
YozG; Pfam:pfam13443 Cro/C1-type HTH DNA-binding domain.
       0.411
ALO40655.1
Hypothetical protein.
       0.411
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.