STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO41809.1SapC; Pfam:pfam07277 SapC. (236 aa)    
Predicted Functional Partners:
ALO44104.1
Pfam:pfam04820 Tryptophan halogenase.
 
     0.749
ALO44105.1
Ligand-gated channel protein; Pfam:pfam00593 TonB dependent receptor.
  
     0.743
ALO41808.1
Hypothetical protein.
 
     0.697
ALO41807.1
Pfam:pfam04820 Tryptophan halogenase.
 
     0.693
ALO41806.1
Hypothetical protein; Pfam:pfam00593 TonB dependent receptor.
 
     0.680
ALO42866.1
Hypothetical protein; Pfam:pfam00593 TonB dependent receptor.
 
     0.648
ALO44496.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.608
ALO44499.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.607
ALO42390.1
Pfam:pfam01645 Conserved region in glutamate synthase.
       0.601
ALO43661.1
Putative outer membrane protein TIGR02001 family; Pfam:pfam09694 Bacterial protein of unknown function (Gcw_chp).
  
     0.583
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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