Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
ALO40675.1Hypothetical protein; Pfam:pfam06580 Histidine kinase. (354 aa)    
Predicted Functional Partners:
ALO40676.1
LytTR family two component transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.
 
 
 0.968
ALO41635.1
Response regulator; Pfam:pfam04397 LytTr DNA-binding domain.
 
 
 0.840
ALO42166.1
Pfam:pfam00072 Response regulator receiver domain.
 
 
 0.839
ALO42609.1
Response regulator; Pfam:pfam04397 LytTr DNA-binding domain.
 
 
 0.839
ALO43700.1
Response regulator of the LytR/AlgR family; Pfam:pfam04397 LytTr DNA-binding domain.
 
 
 0.839
ALO43831.1
Two-component system, LytT family, response regulator; Pfam:pfam00072 Response regulator receiver domain.
 
 
 0.838
ALO41377.1
Alginate biosynthesis regulatory protein; Pfam:pfam00072 Response regulator receiver domain.
 
   0.835
ALO43783.1
Response regulator receiver domain-containing protein; Pfam:pfam04397 LytTr DNA-binding domain.
 
 
 0.595
ALO40674.1
Hypothetical protein.
       0.591
ALO41128.1
Response regulator receiver protein; Pfam:pfam04397 LytTr DNA-binding domain.
 
   0.502
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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