STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO42012.1Hypothetical protein. (198 aa)    
Predicted Functional Partners:
ALO42013.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
       0.730
ALO42011.1
Hypothetical protein; Pfam:pfam00497 Bacterial extracellular solute-binding proteins, family 3.
 
     0.726
ALO42206.1
Hypothetical protein.
       0.601
ALO42207.1
Hypothetical protein; Pfam:pfam13450 NAD(P)-binding Rossmann-like domain.
       0.601
ALO41566.1
Pfam:pfam07445 Primosomal replication protein priB and priC.
  
     0.537
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.535
ALO44221.1
Hypothetical protein.
  
     0.522
ALO44391.1
Putative FG-GAP repeat lipoprotein.
  
    0.466
ALO41042.1
Pfam:pfam11101 Protein of unknown function (DUF2884).
  
     0.455
ALO42120.1
Pfam:pfam10972 Protein of unknown function (DUF2803).
  
     0.426
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.