STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO42122.1Diguanylate cyclase; Pfam:pfam00990 GGDEF domain. (386 aa)    
Predicted Functional Partners:
ALO42215.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
 0.937
ALO40748.1
EAL domain-containing protein; Pfam:pfam00563 EAL domain.
 
  
 0.840
ALO40734.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
 0.829
ALO41939.1
EAL domain-containing protein; Pfam:pfam00563 EAL domain.
 
  
 0.805
ALO44122.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
 
    0.797
ALO43435.1
HAMP domain/GGDEF domain/EAL domain-containing protein; Pfam:pfam00563 EAL domain.
 
   0.794
ALO41798.1
Diguanylate cyclase/phosphodiesterase; Pfam:pfam00563 EAL domain.
 
    0.789
ALO43892.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
 
   0.783
ALO43502.1
Pfam:pfam00563 EAL domain.
 
 
 0.779
ALO40927.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase; Pfam:pfam00563 EAL domain.
 
   0.777
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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