STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO42408.1CBS domain containing membrane protein; Pfam:pfam00571 CBS domain. (196 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.465
ALO42407.1
Efflux transporter, RND family, MFP subunit; Pfam:pfam12700 HlyD family secretion protein.
       0.459
ALO42409.1
Forkhead-associated protein; Pfam:pfam00498 FHA domain.
       0.423
ALO44033.1
Fis family transcriptional regulator.
  
     0.422
ALO42405.1
Permease; Pfam:pfam12704 MacB-like periplasmic core domain.
   
   0.420
ALO42406.1
Pfam:pfam00005 ABC transporter.
     
 0.413
ALO42404.1
Sigma-54 dependent DNA-binding response regulator, Fis family protein; Pfam:pfam00158 Sigma-54 interaction domain.
       0.400
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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