STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO42498.1Pfam:pfam07715 TonB-dependent Receptor Plug Domain. (973 aa)    
Predicted Functional Partners:
ALO42500.1
Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. Belongs to the peptidase M38 family.
 
    0.913
ALO42499.1
Hypothetical protein; Pfam:pfam03606 C4-dicarboxylate anaerobic carrier.
 
     0.855
ALO42497.1
Cyanophycinase.
 
     0.758
ALO44389.1
N-acetyltransferase GCN5.
  
     0.672
ALO44510.1
Short-chain fatty acid transporter; Pfam:pfam03606 C4-dicarboxylate anaerobic carrier.
 
     0.617
ALO42684.1
Pfam:pfam00593 TonB dependent receptor.
  
     0.601
ALO44391.1
Putative FG-GAP repeat lipoprotein.
  
 
   0.526
ALO43703.1
Hypothetical protein.
  
     0.521
ALO42607.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.516
ALO44424.1
Energy transducer TonB; Pfam:pfam03544 Gram-negative bacterial TonB protein C-terminal.
 
   0.499
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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