STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO42691.1Pfam:pfam00593 TonB dependent receptor. (700 aa)    
Predicted Functional Partners:
ALO42538.1
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.855
ALO43951.1
Energy transducer TonB; Pfam:pfam03544 Gram-negative bacterial TonB protein C-terminal.
  
 
 0.855
ALO44685.1
Putative TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.855
ALO42690.1
Pfam:pfam07786 Protein of unknown function (DUF1624).
 
  
 0.848
ALO41598.1
FecR-like transmembrane sensor; Pfam:pfam04773 FecR protein.
 
  
 0.664
ALO43108.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
  
 0.643
ALO44569.1
Ferrienterochelin/colicin outer membrane receptor; Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
  
 0.624
ALO44546.1
Iron-regulated membrane protein; Pfam:pfam13703 PepSY-associated TM helix.
 
     0.580
ALO42028.1
Ligand-gated channel protein; Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
  
 0.556
ALO43070.1
Response regulator receiver protein; Pfam:pfam13703 PepSY-associated TM helix.
 
     0.541
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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