STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO42840.1Pfam:pfam00072 Response regulator receiver domain. (216 aa)    
Predicted Functional Partners:
ALO42616.1
Hybrid sensory histidine kinase BarA; Pfam:pfam09984 Uncharacterized signal transduction histidine kinase domain (DUF2222).
 
 
 0.992
uvrC
UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
     
 0.900
ALO42215.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
  
 
 0.854
ALO42838.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase; Pfam:pfam01066 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.850
ALO44037.1
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.843
ALO43245.1
Aerobic respiration control sensor protein ArcB; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 
 0.839
ALO40662.1
Control sensor/kinase (ArcB, TorS, ChiS, LuxQ, BvgS); Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 
 0.837
ALO42921.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 
 0.837
ALO42003.1
Sensor protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 
 0.836
ALO41336.1
Putative two-component hybrid sensor and regulator; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 
 0.836
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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