STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO42859.1Nucleoside-binding outer membrane protein. (259 aa)    
Predicted Functional Partners:
ALO41302.1
Lipoprotein.
  
     0.724
ALO42276.1
Pfam:pfam11949 Protein of unknown function (DUF3466).
  
     0.687
ALO43723.1
Hypothetical protein; Pfam:pfam13485 Peptidase MA superfamily.
  
     0.651
ALO42011.1
Hypothetical protein; Pfam:pfam00497 Bacterial extracellular solute-binding proteins, family 3.
  
     0.645
ALO42121.1
Lipoprotein.
  
     0.625
PP2015_15
Pfam:pfam12945 Flagellar protein YcgR.
  
     0.611
ALO42381.1
Pfam:pfam11207 Protein of unknown function (DUF2989).
  
     0.591
ALO44358.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.586
ALO42440.1
Ankyrin repeat-containing protein; Pfam:pfam12796 Ankyrin repeats (3 copies).
  
     0.573
ALO40830.1
Anti-sigma B factor antagonist; Pfam:pfam13466 STAS domain.
  
     0.568
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.