STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO43407.1Tetratricopeptide repeat domain protein. (459 aa)    
Predicted Functional Partners:
ALO43403.1
Transporter proton channel domain containing protein; Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
 
     0.951
ALO43405.1
Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
 
     0.890
ALO43404.1
Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
 
     0.845
ALO43408.1
Lipoprotein; Pfam:pfam10973 Protein of unknown function (DUF2799).
 
     0.831
ALO43402.1
Pfam:pfam11932 Protein of unknown function (DUF3450).
       0.786
ALO43406.1
Hypothetical protein.
       0.786
ALO41360.1
TonB-dependent receptor domain-containing protein; Pfam:pfam00593 TonB dependent receptor.
  
     0.743
ALO40699.1
XRE family transcriptional regulator; Pfam:pfam12844 Helix-turn-helix domain.
  
     0.595
ALO41342.1
Hypothetical protein; Pfam:pfam14358 Domain of unknown function (DUF4405).
  
     0.580
ALO44254.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.531
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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