STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO43415.1Pfam:pfam14052 Capsule assembly protein Wzi. (454 aa)    
Predicted Functional Partners:
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
    0.896
ALO43413.1
Pfam:pfam13972 Bacterial transcriptional repressor.
 
     0.804
ALO40933.1
Lipopolysaccharide biosynthesis protein; Pfam:pfam13807 G-rich domain on putative tyrosine kinase.
 
   
 0.691
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.650
ALO40991.1
Bmp7; Pfam:pfam00067 Cytochrome P450.
   
 0.641
ALO40930.1
Periplasmic protein; Pfam:pfam02563 Polysaccharide biosynthesis/export protein.
 
   
 0.614
ALO44387.1
Putative transcriptional regulator; Pfam:pfam12268 Protein of unknown function (DUF3612).
 
     0.610
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.596
ALO42842.1
Hypothetical protein; Pfam:pfam06452 Domain of unknown function (DUF1083).
  
     0.566
ALO43223.1
Pfam:pfam13560 Helix-turn-helix domain.
  
     0.503
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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