STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO43429.1Peptidase. (808 aa)    
Predicted Functional Partners:
ALO42902.1
Peptidase; Pfam:pfam00246 Zinc carboxypeptidase.
 
     0.757
fbp
Fructose-1,6-bisphosphatase class 1; Pfam:pfam00316 Fructose-1-6-bisphosphatase; Belongs to the FBPase class 1 family.
       0.741
ALO40916.1
Signal peptide-containing protein.
  
     0.735
ALO44117.1
Pfam:pfam04389 Peptidase family M28.
  
     0.711
ALO44220.1
Xaa-Pro aminopeptidase family protein; Pfam:pfam00557 Metallopeptidase family M24.
  
     0.702
ALO44409.1
Putative phosphohistidine phosphatase, SixA; Pfam:pfam00300 Histidine phosphatase superfamily (branch 1).
  
     0.665
ALO43233.1
Carboxypeptidase; Pfam:pfam00450 Serine carboxypeptidase.
  
     0.572
ALO42078.1
Peptidase; Pfam:pfam00326 Prolyl oligopeptidase family.
  
     0.568
ALO41042.1
Pfam:pfam11101 Protein of unknown function (DUF2884).
       0.479
ALO43428.1
Hypothetical protein.
       0.464
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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