STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO43452.1Hypothetical protein; Pfam:pfam00486 Transcriptional regulatory protein, C terminal. (776 aa)    
Predicted Functional Partners:
ALO42129.1
Intercellular adhesion protein A; Pfam:pfam02397 Bacterial sugar transferase.
  
 
 0.854
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
  
 0.823
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.800
ALO44472.1
Hypothetical protein; Pfam:pfam00486 Transcriptional regulatory protein, C terminal.
  
    0.757
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.753
ALO41125.1
Pfam:pfam00486 Transcriptional regulatory protein, C terminal.
  
    0.730
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.696
ALO42093.1
DNA-binding winged-HTH domain protein; Pfam:pfam00486 Transcriptional regulatory protein, C terminal.
  
    0.688
ALO43232.1
Pfam:pfam00543 Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.661
ALO41385.1
Pfam:pfam00543 Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.661
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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