Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALO40825.1Na:Ca transport protein; Pfam:pfam01699 Sodium/calcium exchanger protein. (337 aa)    
Predicted Functional Partners:
ALO40823.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
  
 0.872
ALO40820.1
Pfam:pfam00005 ABC transporter.
     
 0.870
lptC
Lipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
     
 0.864
ALO40824.1
Arabinose 5-phosphate isomerase; Pfam:pfam01380 SIS domain.
     
 0.856
ALO40821.1
ABC transporter substrate-binding protein; Pfam:pfam03968 OstA-like protein.
     
 0.854
ALO40819.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.801
ALO40817.1
PTS enzyme IIA; Pfam:pfam00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
       0.776
ALO40818.1
Ribosome hibernation promoting factor HPF; Pfam:pfam02482 Sigma 54 modulation protein / S30EA ribosomal protein.
       0.776
ALO40815.1
Phosphate ABC transporter permease; Pfam:pfam00381 PTS HPr component phosphorylation site.
     
 0.768
ALO40816.1
glmZ(sRNA)-inactivating NTPase; Displays ATPase and GTPase activities.
       0.764
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.