STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO43486.1Pfam:pfam11104 Type IV pilus assembly protein PilM. (359 aa)    
Predicted Functional Partners:
ALO43485.1
Type IV pilus biogenesis protein PilN; Pfam:pfam05137 Fimbrial assembly protein (PilN).
 
 
 0.999
ALO43482.1
Type IV pilus biogenesis protein PilQ; Pfam:pfam00263 Bacterial type II and III secretion system protein.
 
 
 0.996
ALO43484.1
Pfam:pfam04350 Pilus assembly protein, PilO.
 
 
 0.996
ALO43483.1
Pfam:pfam04351 Pilus assembly protein, PilP.
 
 
 0.994
PP2015_20
Peptidoglycan-binding protein; Pfam:pfam01476 LysM domain.
  
 
   0.926
ALO41094.1
Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
 
 
 0.891
ALO41091.1
Pfam:pfam00437 Type II/IV secretion system protein.
 
 
 
 0.835
ALO42951.1
Twitching motility protein PilU; Pfam:pfam00437 Type II/IV secretion system protein.
  
  
 0.826
ALO42952.1
Twitching motility protein PilT; Pfam:pfam00437 Type II/IV secretion system protein.
 
   
 0.818
ALO42465.1
Type 4 fimbrial biogenesis protein PILZ; Pfam:pfam07238 PilZ domain.
  
   
 0.810
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.