STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO43548.1Nitrogen availability sensory kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (360 aa)    
Predicted Functional Partners:
ntrC
Two-component response regulator; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 0.998
ALO41385.1
Pfam:pfam00543 Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 0.984
ALO43550.1
Hypothetical protein; Pfam:pfam00027 Cyclic nucleotide-binding domain.
 
   
 0.892
ALO43232.1
Pfam:pfam00543 Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 
 0.849
ALO41016.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S); Pfam:pfam00563 EAL domain.
 
 
 0.831
ALO43547.1
Hypothetical protein; Pfam:pfam13511 Domain of unknown function (DUF4124).
       0.822
ALO43231.1
Pfam:pfam00909 Ammonium Transporter Family.
 
 
 0.814
ALO43546.1
Pfam:pfam00120 Glutamine synthetase, catalytic domain.
  
  
 0.741
ALO43322.1
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 
 0.733
PP2015_69
PAS domain S-box/PAS domain S-box/diguanylate cyclase (GGDEF) domain protein; Pfam:pfam00563 EAL domain.
 
 
 0.698
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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