STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO43588.1General secretion pathway protein C; Pfam:pfam11356 Type IV pilus biogenesis. (297 aa)    
Predicted Functional Partners:
ALO43587.1
Pfam:pfam00263 Bacterial type II and III secretion system protein.
 
 
 0.997
gspI
Pfam:pfam02501 Type II secretion system (T2SS), protein I.
 
  
 0.973
ALO43579.1
Type II secretion system protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.971
ALO43581.1
Pfam:pfam11612 Type II secretion system (T2SS), protein J.
 
  
 0.970
ALO43578.1
Type II secretion system protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.967
ALO43580.1
Pfam:pfam03934 Type II secretion system (T2SS), protein K.
 
  
 0.966
ALO43577.1
Pfam:pfam01203 Type II secretion system (T2SS), protein N.
 
   
 0.965
ALO43584.1
Pfam:pfam08334 Type II secretion system (T2SS), protein G.
 
  
 0.940
ALO43583.1
General secretion pathway protein H.
 
  
 0.939
ALO43585.1
Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
  
 0.935
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.