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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO40846.1Pfam:pfam02021 Uncharacterized protein family UPF0102; Belongs to the UPF0102 family. (121 aa)    
Predicted Functional Partners:
ALO40845.1
DnaA initiator-associating protein DiaA; Pfam:pfam13580 SIS domain.
  
  
 0.913
ALO40844.1
Hypothetical protein; Pfam:pfam04972 BON domain.
     
 0.898
ALO40847.1
Lipoprotein; Pfam:pfam04348 LppC putative lipoprotein.
     
 0.872
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.789
ALO40730.1
Competence protein ComM; Pfam:pfam01078 Magnesium chelatase, subunit ChlI.
 
  
 0.753
ALO43515.1
Competence protein ComF; Pfam:pfam00156 Phosphoribosyl transferase domain.
 
    0.686
PP2015_21
DNA processing protein; Pfam:pfam02481 DNA recombination-mediator protein A.
 
    0.615
ALO42124.1
Putative response regulator; Pfam:pfam07228 Stage II sporulation protein E (SpoIIE).
  
    0.479
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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