STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO43684.1Diguanylate cyclase; Pfam:pfam00990 GGDEF domain. (342 aa)    
Predicted Functional Partners:
ALO42215.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
 
 0.751
ALO43683.1
Pfam:pfam05960 Bacterial protein of unknown function (DUF885).
       0.723
ALO43087.1
Diguanylate cyclase (GGDEF) domain protein; Pfam:pfam00563 EAL domain.
  
  
 0.678
ALO43165.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
  
    0.595
ALO40748.1
EAL domain-containing protein; Pfam:pfam00563 EAL domain.
 
  
 0.583
ALO43330.1
Pfam:pfam00563 EAL domain.
  
   0.573
ALO40734.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
   0.563
ALO42124.1
Putative response regulator; Pfam:pfam07228 Stage II sporulation protein E (SpoIIE).
   
 
 0.545
ALO42993.1
PAS domain S-box/diguanylate cyclase (GGDEF) domain protein; Pfam:pfam00563 EAL domain.
 
   0.522
ALO43693.1
GGDEF domain-containing protein; Pfam:pfam00990 GGDEF domain.
 
     0.518
Your Current Organism:
Pseudoalteromonas phenolica
NCBI taxonomy Id: 161398
Other names: IAM 14989, JCM 21460, KCTC 12086, P. phenolica, Pseudoalteromonas phenolica Isnansetyo and Kamei 2003, Pseudoalteromonas sp. O-BC30, strain O-BC30
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